Link paper and GitHub repository to dataset card

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by nielsr HF Staff - opened
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  1. README.md +24 -8
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  ---
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  license: apache-2.0
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  task_categories:
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- - graph-ml
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  tags:
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- - biology
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- - protein
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- - molecule
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- - dna
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- - rna
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- - pretraining
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  ---
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  # Cuttlefish-Encoder-Data
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- Encoder pretraining dataset for [Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder). Contains all-atom structural graphs for molecules, proteins, DNA, and RNA in a unified parquet format.
 
 
 
 
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  ## Dataset structure
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  | Cuttlefish LLM | [zihaojing/Cuttlefish](https://huggingface.co/zihaojing/Cuttlefish) |
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  | Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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  | SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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  license: apache-2.0
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  task_categories:
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+ - graph-ml
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  tags:
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+ - biology
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+ - protein
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+ - molecule
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+ - dna
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+ - rna
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+ - pretraining
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  ---
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  # Cuttlefish-Encoder-Data
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+ This repository contains the encoder pretraining dataset for **Cuttlefish**, a unified all-atom LLM designed for structure-grounded reasoning. It consists of all-atom structural graphs for molecules, proteins, DNA, and RNA in a unified parquet format, used for masked-reconstruction pretraining of the graph encoder.
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+
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+ - **Paper:** [Scaling-Aware Adapter for Structure-Grounded LLM Reasoning](https://huggingface.co/papers/2602.02780)
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+ - **GitHub Repository:** [zihao-jing/Cuttlefish](https://github.com/zihao-jing/Cuttlefish)
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+ - **Encoder Model:** [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder)
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  ## Dataset structure
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  | Cuttlefish LLM | [zihaojing/Cuttlefish](https://huggingface.co/zihaojing/Cuttlefish) |
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  | Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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  | SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @article{jing2026cuttlefish,
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+ title = {Cuttlefish: Scaling-Aware Adapter for Structure-Grounded LLM Reasoning},
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+ author = {Jing, Zihao and Zeng, Qiuhao and Fang, Ruiyi and Li, Yan Yi and Sun, Yan and Wang, Boyu and Hu, Pingzhao},
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+ booktitle = {Proceedings of the 43rd International Conference on Machine Learning (ICML)},
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+ year = {2026},
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+ url = {https://arxiv.org/abs/2602.02780}
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+ }
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+ ```