🔄 In a Training Loop

Dan Ofer

GrimSqueaker

29 25 582

https://scholar.google.co.il/citations?user=uDx2ItYAAAAJ&hl=en

AI & ML interests

Bioinformatics, Neurobiology, AutoML, AI, Feature engineering, Proteins, Biological foundation models, ML healthcare, NLP

Recent Activity

updated a Space 1 day ago

GrimSqueaker/OTRec

updated a model 2 days ago

GrimSqueaker/ProtSent-V2.5-150M

published a model 2 days ago

GrimSqueaker/ProtSent-V2.5-150M

View all activity

Organizations

New activity in Oxer11/Protein-Function-Annotation 6 days ago

Datasets not viewable

#1 opened 6 days ago by

GrimSqueaker

New activity in oriel9p/protsent-esm2-35M 13 days ago

Model bug update - 35/150M

#2 opened 13 days ago by

GrimSqueaker

New activity in oriel9p/protsent-esm2-150M 15 days ago

Update README.md

#1 opened 15 days ago by

GrimSqueaker

New activity in oriel9p/protsent-esm2-35M 15 days ago

Update README.md

#1 opened 15 days ago by

GrimSqueaker

commented 2 papers 17 days ago

ProteinJEPA: Latent prediction complements protein language models

Paper • 2605.07554 • Published May 8 • 1 •

JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures

Paper • 2602.17162 • Published May 25 • 1 •

New activity in Anonymoususer2223/ProtEnv 3 months ago

Data/files missing

#1 opened 3 months ago by

GrimSqueaker

New activity in Synthyra/ESM2-150M 6 months ago

Lower results?

#1 opened 6 months ago by

GrimSqueaker

New activity in Synthyra/Profluent-E1-150M 7 months ago

The checkpoint you are trying to load has model type `E1` but Transformers does not recognize this architecture

#1 opened 7 months ago by

GrimSqueaker

New activity in zhihan1996/DNABERT-2-117M 7 months ago

Make compatible with recent versions of triton

#32 opened over 1 year ago by

tanhevg

New activity in McClain/Evo2_1b_base 8 months ago

Evo2ForCausalLM, Evo2Tokenizer ?

#1 opened 8 months ago by

GrimSqueaker

New activity in Synthyra/ESMplusplus_small 9 months ago

Thanks for this!

#4 opened 9 months ago by

GrimSqueaker

New activity in GenerTeam/variant-effect-prediction 9 months ago

Bug: Clinvar not displayed

#2 opened 9 months ago by

GrimSqueaker

New activity in verbit/hebrew_medical_audio 11 months ago

Data loading example/ raw data?

#3 opened 11 months ago by

GrimSqueaker

Transcriptions?

#2 opened 11 months ago by

GrimSqueaker

New activity in togethercomputer/evo-1-131k-base 12 months ago

Error in model page: Configuration Parsing Warning: In UNKNOWN_FILENAME: "auto_map.AutoTokenizer" must be a string

#4 opened 12 months ago by

GrimSqueaker

New activity in genbio-ai/GB.DNA-300M 12 months ago

Tokenizer loading?

#3 opened 12 months ago by

GrimSqueaker

New activity in genbio-ai/GB.DNA-7B 12 months ago

Model usage?

#4 opened over 1 year ago by

GrimSqueaker

New activity in kuleshov-group/caduceus-ps_seqlen-131k_d_model-256_n_layer-16 over 1 year ago

Caduceus for Transfer Learning

#1 opened over 2 years ago by

Sethulakshmi

New activity in songlab/gnomad over 1 year ago

GnoMad label?

#1 opened over 1 year ago by

GrimSqueaker

Dan Ofer

AI & ML interests

Recent Activity

Organizations

GrimSqueaker's activity

Datasets not viewable

Model bug update - 35/150M

Update README.md

Update README.md

Data/files missing

Lower results?

The checkpoint you are trying to load has model type `E1` but Transformers does not recognize this architecture

Make compatible with recent versions of triton

Evo2ForCausalLM, Evo2Tokenizer ?

Thanks for this!

Bug: Clinvar not displayed

Data loading example/ raw data?

Transcriptions?

Error in model page: Configuration Parsing Warning: In UNKNOWN_FILENAME: "auto_map.AutoTokenizer" must be a string

Tokenizer loading?

Model usage?

Caduceus for Transfer Learning

GnoMad label?